{
  "_id": "6a17fa5eacfb0bcc41da9c8f",
  "Package": "kernscr",
  "Type": "Package",
  "Title": "Kernel Machine Score Test for Semi-Competing Risks",
  "Version": "1.0.7",
  "Date": "2025-07-24",
  "Authors@R": "c(person(\"Matey\", \"Neykov\", role = c(\"aut\"),\nemail = \"mneykov@gmail.com\"),\nperson(c(\"Boris\", \"P\"), \"Hejblum\", role = c(\"aut\", \"cre\"),\nemail = \"boris.hejblum@u-bordeaux.fr\"),\nperson(c(\"Jennifer\", \"A\"), \"Sinnot\", role = c(\"aut\"),\nemail = \"jsinnott@stat.osu.edu\")\n)",
  "Maintainer": "Boris P Hejblum <boris.hejblum@u-bordeaux.fr>",
  "Description": "Kernel Machine Score Test for Pathway Analysis in the\nPresence of Semi-Competing Risks. Method is detailed in:\nNeykov, Hejblum & Sinnott (2018) <doi:\n10.1177/0962280216653427>.",
  "License": "GPL-2 | file LICENSE",
  "LazyData": "TRUE",
  "BugReports": "https://github.com/borishejblum/kernscr/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "URL": "http://borishejblum.github.io/kernscr/",
  "Repository": "https://borishejblum.r-universe.dev",
  "Date/Publication": "2025-07-26 23:18:24 UTC",
  "RemoteUrl": "https://github.com/borishejblum/kernscr",
  "RemoteRef": "HEAD",
  "RemoteSha": "3a470238c998642715c47766375101b7696c6051",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-28 08:11:08 UTC",
    "User": "root"
  },
  "Author": "Matey Neykov [aut],\nBoris P Hejblum [aut, cre],\nJennifer A Sinnot [aut]",
  "MD5sum": "49554e08e2eec163c80740c98dcd3529",
  "_user": "borishejblum",
  "_type": "src",
  "_file": "kernscr_1.0.7.tar.gz",
  "_fileid": "59432798a07e22f0efc1c6f819d8d73a55f808baf3c6aee26fddf4ab7060015f",
  "_filesize": 155468,
  "_sha256": "59432798a07e22f0efc1c6f819d8d73a55f808baf3c6aee26fddf4ab7060015f",
  "_created": "2026-05-28T08:11:08.000Z",
  "_published": "2026-05-28T08:18:38.463Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78250213553,
      "time": 137,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7260911716"
    },
    {
      "job": 78250213582,
      "time": 131,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7260909916"
    },
    {
      "job": 78250213706,
      "time": 193,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7260919021"
    },
    {
      "job": 78250213739,
      "time": 153,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7260907913"
    },
    {
      "job": 78249766210,
      "time": 174,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7260867614"
    },
    {
      "job": 78250213751,
      "time": 136,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7260911353"
    },
    {
      "job": 78250213633,
      "time": 300,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7260961722"
    },
    {
      "job": 78250213681,
      "time": 329,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7260970918"
    },
    {
      "job": 78250213747,
      "time": 417,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7261000131"
    }
  ],
  "_buildurl": "https://github.com/r-universe/borishejblum/actions/runs/26562794863",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/borishejblum/kernscr",
  "_commit": {
    "id": "3a470238c998642715c47766375101b7696c6051",
    "author": "borishejblum <boris.hejblum@gmail.com>",
    "committer": "borishejblum <boris.hejblum@gmail.com>",
    "message": "fixing NOTES check in crna-status-checks\n",
    "time": 1753571904
  },
  "_maintainer": {
    "name": "Boris P Hejblum",
    "email": "boris.hejblum@u-bordeaux.fr",
    "login": "borishejblum",
    "description": "",
    "uuid": 5277851
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0",
      "role": "Depends"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "readxl",
      "role": "Suggests"
    },
    {
      "package": "org.Hs.eg.db",
      "role": "Suggests"
    }
  ],
  "_owner": "borishejblum",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-30",
      "n": 11
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "borishejblum",
      "count": 42,
      "uuid": 5277851
    },
    {
      "user": "jennifer-anne-sinnott",
      "count": 2,
      "uuid": 18288245
    }
  ],
  "_userbio": {
    "uuid": 5277851,
    "type": "user",
    "name": "Boris"
  },
  "_downloads": {
    "count": 186,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/kernscr"
  },
  "_devurl": "https://github.com/borishejblum/kernscr",
  "_pkgdown": "http://borishejblum.github.io/kernscr/",
  "_searchresults": 4,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/kernscr.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/borishejblum/kernscr",
  "_realowner": "borishejblum",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2016-05-03"
    },
    {
      "version": "1.0.1",
      "date": "2016-05-17"
    },
    {
      "version": "1.0.3",
      "date": "2016-06-28"
    },
    {
      "version": "1.0.5",
      "date": "2019-08-21"
    },
    {
      "version": "1.0.6",
      "date": "2023-04-17"
    },
    {
      "version": "1.0.7",
      "date": "2025-07-24"
    }
  ],
  "_exports": [
    "compute_all_tests",
    "findRhoInterval",
    "gaussKernelEval_multipleRhos",
    "kernelEval",
    "plot_kernscr_kernelsplit",
    "plot_kernscr_methodsplit",
    "polyKernelEval_multipleRhos",
    "sim_SCR_data",
    "VTM"
  ],
  "_datasets": [
    {
      "name": "cancer_pathways",
      "title": "70 pathways from MSigDB c2CP",
      "object": "cancer_pathways",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "kernscr-package",
      "title": "kernscr: a package to perform Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks",
      "topics": [
        "kernscr-package",
        "kernscr"
      ]
    },
    {
      "page": "cancer_pathways",
      "title": "70 pathways from MSigDB c2CP",
      "topics": [
        "cancer_pathways",
        "vijver"
      ]
    },
    {
      "page": "compute_all_tests",
      "title": "Testing pathway risk association",
      "topics": [
        "compute_all_tests"
      ]
    },
    {
      "page": "findRhoInterval",
      "title": "Find an interval constraining the rho parameter for a non linear kernel",
      "topics": [
        "findRhoInterval"
      ]
    },
    {
      "page": "sim_SCR_data",
      "title": "Data Simulation Function",
      "topics": [
        "sim_SCR_data"
      ]
    }
  ],
  "_readme": "https://github.com/borishejblum/kernscr/raw/HEAD/README.md",
  "_rundeps": [
    "MASS",
    "mvtnorm"
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "kernscr",
  "_universes": [
    "borishejblum"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.7",
      "date": "2026-05-28T08:13:31.000Z",
      "distro": "noble",
      "commit": "3a470238c998642715c47766375101b7696c6051",
      "fileid": "0596b9c8f8010d919de86891d6d048d0e6d4de096c30d84a3701cf617fea85fa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/26562794863"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.7",
      "date": "2026-05-28T08:13:27.000Z",
      "distro": "noble",
      "commit": "3a470238c998642715c47766375101b7696c6051",
      "fileid": "fc68d9356e39626d195f83c084eec7b1f7bab0cdb9b252713703999b5709c76b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/26562794863"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.7",
      "date": "2026-05-28T08:13:57.000Z",
      "commit": "3a470238c998642715c47766375101b7696c6051",
      "fileid": "4907883821392059c9481480436c3821351be863e97b1b165be8de80c27caed8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/26562794863"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.7",
      "date": "2026-05-28T08:13:21.000Z",
      "commit": "3a470238c998642715c47766375101b7696c6051",
      "fileid": "ec63142ffa485c6d6e89bdc2dad592ccc67d1e65f680a96ffe75c89b9f328884",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/26562794863"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.7",
      "date": "2026-05-28T08:13:40.000Z",
      "commit": "3a470238c998642715c47766375101b7696c6051",
      "fileid": "7b5fc0d509302676839c19b606964e2bd461800f73b2b3acc25aac4c94259856",
      "status": "success",
      "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/26562794863"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.7",
      "date": "2026-05-28T08:16:13.000Z",
      "commit": "3a470238c998642715c47766375101b7696c6051",
      "fileid": "2b7a379c1d9e6360941f6b28fa6567bc4890cdfcd6295669245478c136946170",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/26562794863"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.7",
      "date": "2026-05-28T08:16:39.000Z",
      "commit": "3a470238c998642715c47766375101b7696c6051",
      "fileid": "5c12a884a38dac279afd398c5f9170bc094280a5eda61ea91e80a0a8a21be842",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/26562794863"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.7",
      "date": "2026-05-28T08:17:57.000Z",
      "commit": "3a470238c998642715c47766375101b7696c6051",
      "fileid": "525bbe2ec1b1fa6f57266f5c9e1d7927eba596e47a4b799a216c8c66da825dcb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/26562794863"
    }
  ]
}