{ "_id": "6abe249d99f7aa8c6aa52c13", "Package": "kernscr", "Type": "Package", "Title": "Kernel Machine Score Test for Semi-Competing Risks", "Version": "1.0.7", "Date": "2025-07-24", "Authors@R": "c(person(\"Matey\", \"Neykov\", role = c(\"aut\"),\nemail = \"mneykov@gmail.com\"),\nperson(c(\"Boris\", \"P\"), \"Hejblum\", role = c(\"aut\", \"cre\"),\nemail = \"boris.hejblum@u-bordeaux.fr\"),\nperson(c(\"Jennifer\", \"A\"), \"Sinnot\", role = c(\"aut\"),\nemail = \"jsinnott@stat.osu.edu\")\n)", "Maintainer": "Boris P Hejblum ", "Description": "Kernel Machine Score Test for Pathway Analysis in the\nPresence of Semi-Competing Risks. Method is detailed in:\nNeykov, Hejblum & Sinnott (2018) .", "License": "GPL-2 | file LICENSE", "LazyData": "TRUE", "BugReports": "https://github.com/borishejblum/kernscr/issues", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "URL": "http://borishejblum.github.io/kernscr/", "Repository": "https://borishejblum.r-universe.dev", "Date/Publication": "2025-07-26 23:18:24 UTC", "RemoteUrl": "https://github.com/borishejblum/kernscr", "RemoteRef": "HEAD", "RemoteSha": "3a470238c998642715c47766375101b7696c6051", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-01 09:05:55 UTC", "User": "root" }, "Author": "Matey Neykov [aut],\nBoris P Hejblum [aut, cre],\nJennifer A Sinnot [aut]", "_user": "borishejblum", "_type": "src", "_file": "kernscr_1.0.7.tar.gz", "_fileid": "https://r2.ropensci.org/8c4d95e25b7b9beeb7cd1f4560a38660cb534627c95a629698ac4bb89da7d013", "_filesize": 157164, "_sha256": "8c4d95e25b7b9beeb7cd1f4560a38660cb534627c95a629698ac4bb89da7d013", "_expires": "2027-01-09T09:15:07.000Z", "_created": "2026-10-01T09:05:55.000Z", "_published": "2026-10-01T09:15:09.630Z", "_jobs": [ { "job": 110298379229, "time": 120, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11151162963" }, { "job": 110298379116, "time": 123, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11151447119" }, { "job": 110298379159, "time": 163, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11151022235" }, { "job": 110298379136, "time": 144, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11150983339" }, { "job": 110297103319, "time": 218, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11150592632" }, { "job": 110298379281, "time": 126, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11150997340" }, { "job": 110298379256, "time": 500, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11151129056" }, { "job": 110298379259, "time": 341, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11150972815" }, { "job": 110298379140, "time": 356, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11151532864" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/borishejblum/actions/runs/36840123850", "_status": "success", "_upstream": "https://github.com/borishejblum/kernscr", "_commit": { "id": "3a470238c998642715c47766375101b7696c6051", "author": "borishejblum ", "committer": "borishejblum ", "message": "fixing NOTES check in crna-status-checks\n", "time": 1753571904 }, "_maintainer": { "name": "Boris P Hejblum", "email": "boris.hejblum@u-bordeaux.fr", "login": "borishejblum", "description": "", "uuid": 5277851 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0", "role": "Depends" }, { "package": "graphics", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "mvtnorm", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "readxl", "role": "Suggests" }, { "package": "org.Hs.eg.db", "role": "Suggests" } ], "_owner": "borishejblum", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "borishejblum", "count": 42, "uuid": 5277851 }, { "user": "jennifer-anne-sinnott", "count": 2, "uuid": 18288245 } ], "_userbio": { "uuid": 5277851, "type": "user", "name": "Boris", "followers": 34 }, "_downloads": { "count": 315, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/kernscr" }, "_devurl": "https://github.com/borishejblum/kernscr", "_pkgdown": "http://borishejblum.github.io/kernscr/", "_searchresults": 4, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/kernscr.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_homeurl": "https://github.com/borishejblum/kernscr", "_realowner": "borishejblum", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2016-05-03" }, { "version": "1.0.1", "date": "2016-05-17" }, { "version": "1.0.3", "date": "2016-06-28" }, { "version": "1.0.5", "date": "2019-08-21" }, { "version": "1.0.6", "date": "2023-04-17" }, { "version": "1.0.7", "date": "2025-07-24" } ], "_exports": [ "compute_all_tests", "findRhoInterval", "gaussKernelEval_multipleRhos", "kernelEval", "plot_kernscr_kernelsplit", "plot_kernscr_methodsplit", "polyKernelEval_multipleRhos", "sim_SCR_data", "VTM" ], "_datasets": [ { "name": "cancer_pathways", "title": "70 pathways from MSigDB c2CP", "object": "cancer_pathways", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "kernscr-package", "title": "kernscr: a package to perform Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks", "topics": [ "kernscr-package", "kernscr" ] }, { "page": "cancer_pathways", "title": "70 pathways from MSigDB c2CP", "topics": [ "cancer_pathways", "vijver" ] }, { "page": "compute_all_tests", "title": "Testing pathway risk association", "topics": [ "compute_all_tests" ] }, { "page": "findRhoInterval", "title": "Find an interval constraining the rho parameter for a non linear kernel", "topics": [ "findRhoInterval" ] }, { "page": "sim_SCR_data", "title": "Data Simulation Function", "topics": [ "sim_SCR_data" ] } ], "_readme": "https://github.com/borishejblum/kernscr/raw/HEAD/README.md", "_rundeps": [ "MASS", "mvtnorm" ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "kernscr", "_universes": [ "borishejblum" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.7", "date": "2026-10-01T09:08:04.000Z", "distro": "resolute", "commit": "3a470238c998642715c47766375101b7696c6051", "fileid": "https://r2.ropensci.org/b2a13b1e1c8b8ce4dc3a943bbb84c016250dc43d9179cdc606a4eab161e0fe61", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/36840123850" }, { "r": "4.6.1", "os": "linux", "version": "1.0.7", "date": "2026-10-01T09:08:08.000Z", "distro": "resolute", "commit": "3a470238c998642715c47766375101b7696c6051", "fileid": "https://r2.ropensci.org/4730b59940ad0d3e5d00ffca8ce3c3b4f85a90703f1cff987a9e6a8d1841e700", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/36840123850" }, { "r": "4.5.3", "os": "mac", "version": "1.0.7", "date": "2026-10-01T09:08:29.000Z", "commit": "3a470238c998642715c47766375101b7696c6051", "fileid": "https://r2.ropensci.org/2ab4e5135ae549572a286b7a337384e292627fe98e9f552639d2906b0fb8315f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/36840123850" }, { "r": "4.6.1", "os": "mac", "version": "1.0.7", "date": "2026-10-01T09:08:09.000Z", "commit": "3a470238c998642715c47766375101b7696c6051", "fileid": "https://r2.ropensci.org/5b51bbce9b114075a8675cb38eec7311d23b00f37517938e6f41868b924847f8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/36840123850" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.7", "date": "2026-10-01T09:08:18.000Z", "commit": "3a470238c998642715c47766375101b7696c6051", "fileid": "https://r2.ropensci.org/90c715869231b74e2e72a9391c50e4fbc6c4bd42b6b581274f51dfd79d52d83f", "status": "success", "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/36840123850" }, { "r": "4.7.0", "os": "win", "version": "1.0.7", "date": "2026-10-01T09:13:49.000Z", "commit": "3a470238c998642715c47766375101b7696c6051", "fileid": "https://r2.ropensci.org/26e336ad19deb75b7b6229857a07ec2f615d822335681becb23fb5ac78a868f7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/36840123850" }, { "r": "4.5.3", "os": "win", "version": "1.0.7", "date": "2026-10-01T09:11:42.000Z", "commit": "3a470238c998642715c47766375101b7696c6051", "fileid": "https://r2.ropensci.org/7c15608104c823cf2ced6280c98e6684d745e4b74db14c54a66e38ee85eb5cce", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/36840123850" }, { "r": "4.6.1", "os": "win", "version": "1.0.7", "date": "2026-10-01T09:11:58.000Z", "commit": "3a470238c998642715c47766375101b7696c6051", "fileid": "https://r2.ropensci.org/23e2cffc636cfcf5b5e5755539e6d30312fe54ed7eeb1d3ed81d4f5656d77169", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/borishejblum/actions/runs/36840123850" } ] }