Package: kernscr 1.0.6
kernscr: Kernel Machine Score Test for Semi-Competing Risks
Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks. Method is detailed in: Neykov, Hejblum & Sinnott (2018) <doi:10.1177/0962280216653427>.
Authors:
kernscr_1.0.6.tar.gz
kernscr_1.0.6.zip(r-4.5)kernscr_1.0.6.zip(r-4.4)kernscr_1.0.6.zip(r-4.3)
kernscr_1.0.6.tgz(r-4.4-any)kernscr_1.0.6.tgz(r-4.3-any)
kernscr_1.0.6.tar.gz(r-4.5-noble)kernscr_1.0.6.tar.gz(r-4.4-noble)
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kernscr.pdf |kernscr.html✨
kernscr/json (API)
NEWS
# Install 'kernscr' in R: |
install.packages('kernscr', repos = c('https://borishejblum.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/borishejblum/kernscr/issues
- cancer_pathways - 70 pathways from MSigDB c2CP
Last updated 2 years agofrom:db66c9e371. Checks:OK: 3 NOTE: 4. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 14 2024 |
R-4.5-win | NOTE | Nov 14 2024 |
R-4.5-linux | NOTE | Nov 14 2024 |
R-4.4-win | NOTE | Nov 14 2024 |
R-4.4-mac | NOTE | Nov 14 2024 |
R-4.3-win | OK | Nov 14 2024 |
R-4.3-mac | OK | Nov 14 2024 |
Exports:compute_all_testsfindRhoIntervalgaussKernelEval_multipleRhoskernelEvalplot_kernscr_kernelsplitplot_kernscr_methodsplitpolyKernelEval_multipleRhossim_SCR_dataVTM
Readme and manuals
Help Manual
Help page | Topics |
---|---|
kernscr: a package to perform Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks | kernscr-package kernscr |
70 pathways from MSigDB c2CP | cancer_pathways vijver |
Testing pathway risk association | compute_all_tests |
Find an interval constraining the rho parameter for a non linear kernel | findRhoInterval |
Data Simulation Function | sim_SCR_data |