Package: kernscr 1.0.7
kernscr: Kernel Machine Score Test for Semi-Competing Risks
Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks. Method is detailed in: Neykov, Hejblum & Sinnott (2018) <doi:10.1177/0962280216653427>.
Authors:
kernscr_1.0.7.tar.gz
kernscr_1.0.7.zip(r-4.7)kernscr_1.0.7.zip(r-4.6)kernscr_1.0.7.zip(r-4.5)
kernscr_1.0.7.tgz(r-4.6-any)kernscr_1.0.7.tgz(r-4.5-any)
kernscr_1.0.7.tar.gz(r-4.7-any)kernscr_1.0.7.tar.gz(r-4.6-any)
kernscr_1.0.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
kernscr/json (API)
NEWS
| # Install 'kernscr' in R: |
| install.packages('kernscr', repos = c('https://borishejblum.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/borishejblum/kernscr/issues
Pkgdown/docs site:https://borishejblum.github.io
- cancer_pathways - 70 pathways from MSigDB c2CP
Last updated from:3a470238c9. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 137 | ||
| source / vignettes | OK | 174 | ||
| linux-release-x86_64 | OK | 131 | ||
| macos-release-arm64 | OK | 153 | ||
| macos-oldrel-arm64 | OK | 193 | ||
| windows-devel | OK | 300 | ||
| windows-release | OK | 417 | ||
| windows-oldrel | OK | 329 | ||
| wasm-release | OK | 136 |
Exports:compute_all_testsfindRhoIntervalgaussKernelEval_multipleRhoskernelEvalplot_kernscr_kernelsplitplot_kernscr_methodsplitpolyKernelEval_multipleRhossim_SCR_dataVTM
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| kernscr: a package to perform Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks | kernscr-package kernscr |
| 70 pathways from MSigDB c2CP | cancer_pathways vijver |
| Testing pathway risk association | compute_all_tests |
| Find an interval constraining the rho parameter for a non linear kernel | findRhoInterval |
| Data Simulation Function | sim_SCR_data |
