Package: kernscr 1.0.6

kernscr: Kernel Machine Score Test for Semi-Competing Risks

Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks. Method is detailed in: Neykov, Hejblum & Sinnott (2018) <doi:10.1177/0962280216653427>.

Authors:Matey Neykov [aut], Boris P Hejblum [aut, cre], Jennifer A Sinnot [aut]

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kernscr/json (API)
NEWS

# Install 'kernscr' in R:

install.packages('kernscr', repos = c('https://borishejblum.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/borishejblum/kernscr/issues

Datasets:

cancer_pathways - 70 pathways from MSigDB c2CP

On CRAN:

9 exports 0.74 score 2 dependencies 4 scripts 287 downloads

Last updated 1 years agofrom:db66c9e371. Checks:OK: 3 NOTE: 4. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 15 2024
R-4.5-win	NOTE	Sep 15 2024
R-4.5-linux	NOTE	Sep 15 2024
R-4.4-win	NOTE	Sep 15 2024
R-4.4-mac	NOTE	Sep 15 2024
R-4.3-win	OK	Sep 15 2024
R-4.3-mac	OK	Sep 15 2024

Exports:compute_all_tests findRhoInterval gaussKernelEval_multipleRhos kernelEval plot_kernscr_kernelsplit plot_kernscr_methodsplit polyKernelEval_multipleRhos sim_SCR_data VTM

Dependencies:MASS mvtnorm

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
kernscr: a package to perform Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks	kernscr-package kernscr
70 pathways from MSigDB c2CP	cancer_pathways vijver
Testing pathway risk association	compute_all_tests
Find an interval constraining the rho parameter for a non linear kernel	findRhoInterval
Data Simulation Function	sim_SCR_data